No Prynne/Joyce overlap seems to exist. This strikes me as odd. You might expect there to be one as they're both taking language to its limits, and I'm assuming Prynne will have definitely read Joyce, but they seem almost to belong to different universes.
I can occasionally see traces of other figures from the Joyce era, like pound and eliot, in Prynne, but not Joyce himself.
I suppose the big difference is Joyce combines and invents new words, whereas Prynne's words are all real, however strange and unfamiliar they are.